Package qupath.lib.plugins.objects

Class TileClassificationsToAnnotationsPlugin<T>

java.lang.Object

qupath.lib.plugins.AbstractPlugin<T>

qupath.lib.plugins.AbstractInteractivePlugin<T>

qupath.lib.plugins.AbstractDetectionPlugin<T>

qupath.lib.plugins.objects.TileClassificationsToAnnotationsPlugin<T>

Type Parameters:

T -

All Implemented Interfaces:

PathInteractivePlugin<T>, PathPlugin<T>

public class TileClassificationsToAnnotationsPlugin<T>
extends AbstractDetectionPlugin<T>

Plugin to merge classified tiles into annotation objects.

Author:

Pete Bankhead

Constructor Summary

Constructors

Constructor	Description
TileClassificationsToAnnotationsPlugin()

Method Summary

Modifier and Type	Method	Description
protected void	addRunnableTasks(ImageData<T> imageData, PathObject parentObject, List<Runnable> tasks)	For a specified parent object, generate a task to run.
ParameterList	getDefaultParameterList(ImageData<T> imageData)	This should return a default ParameterList containing any information that is needed to repeat the task exactly.
String	getDescription()	Get a brief description of the plugin's purpose & operation.
String	getLastResultsDescription()	(Optional) short one-line description of the results, e.g.
String	getName()	Get the name of the plugin for display.
protected Collection<PathObject>	getParentObjects(ImageData<T> imageData)	Get all selected objects that are instances of a supported class.
Collection<Class<? extends PathObject>>	getSupportedParentObjectClasses()	Get a collection of possible parent objects that the plugin could have.

Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin

alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgument

Methods inherited from class qupath.lib.plugins.AbstractPlugin

addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPlugin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface qupath.lib.plugins.PathPlugin

runPlugin

Constructor Details

TileClassificationsToAnnotationsPlugin

public TileClassificationsToAnnotationsPlugin()

Method Details

getName

public String getName()

Description copied from interface: PathPlugin

Get the name of the plugin for display.

This should be descriptive and, above all, short - as it may be used for menu item names & dialog box titles.

Returns:

getDescription

public String getDescription()

Description copied from interface: PathPlugin

Get a brief description of the plugin's purpose & operation.

If no description is provided, this may return null.

Returns:

getLastResultsDescription

public String getLastResultsDescription()

Description copied from interface: PathPlugin

(Optional) short one-line description of the results, e.g. to say how many objects detected. GUIs may choose to display this on a label during interactive processing.

Returns:

getSupportedParentObjectClasses

public Collection<Class<? extends PathObject>> getSupportedParentObjectClasses()

Description copied from interface: PathInteractivePlugin

Get a collection of possible parent objects that the plugin could have. This may be used, for example, to specified that analysis may be applied to any/all TMA cores or annotations. If no parent objects are required, PathRootObject.class should be returned in the list.

Specified by:

getSupportedParentObjectClasses in interface PathInteractivePlugin<T>

Overrides:

getSupportedParentObjectClasses in class AbstractDetectionPlugin<T>

Returns:

addRunnableTasks

protected void addRunnableTasks(ImageData<T> imageData,
 PathObject parentObject,
 List<Runnable> tasks)

Description copied from class: AbstractPlugin

For a specified parent object, generate a task to run. In practice, this method can be overridden to return anything/nothing if getTasks is overridden instead.

Specified by:

addRunnableTasks in class AbstractPlugin<T>

getDefaultParameterList

public ParameterList getDefaultParameterList(ImageData<T> imageData)

Description copied from class: AbstractInteractivePlugin

This should return a default ParameterList containing any information that is needed to repeat the task exactly.

Specified by:

getDefaultParameterList in interface PathInteractivePlugin<T>

Specified by:

getDefaultParameterList in class AbstractInteractivePlugin<T>

Returns:

getParentObjects

protected Collection<PathObject> getParentObjects(ImageData<T> imageData)

Description copied from class: AbstractDetectionPlugin

Get all selected objects that are instances of a supported class.

Overrides:

getParentObjects in class AbstractDetectionPlugin<T>

Returns: