Package qupath.lib.plugins

Class AbstractDetectionPlugin<T>

java.lang.Object

qupath.lib.plugins.AbstractPlugin<T>

qupath.lib.plugins.AbstractInteractivePlugin<T>

qupath.lib.plugins.AbstractDetectionPlugin<T>

Type Parameters:

T -

All Implemented Interfaces:

PathInteractivePlugin<T>, PathPlugin<T>

Direct Known Subclasses:

AbstractTileableDetectionPlugin, DetectCytokeratinCV, PositivePixelCounterIJ, SimpleTissueDetection2, TileClassificationsToAnnotationsPlugin, TilerPlugin

public abstract class AbstractDetectionPlugin<T>
extends AbstractInteractivePlugin<T>

Abstract plugin aimed towards cases where new objects will be detected inside existing objects (normally TMA cores or annotations).

TODO: Note this isn't a very stable API (because it's quite awkward), and it's therefore liable to change...

Author:

Pete Bankhead

Field Summary

Fields inherited from class qupath.lib.plugins.AbstractInteractivePlugin

params

Constructor Summary

Constructors

Constructor	Description
AbstractDetectionPlugin()

Method Summary

Modifier and Type	Method	Description
protected Collection<? extends PathObject>	getParentObjects(ImageData<T> imageData)	Get all selected objects that are instances of a supported class.
Collection<Class<? extends PathObject>>	getSupportedParentObjectClasses()	Get a collection of possible parent objects that the plugin could have.

Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin

alwaysPromptForObjects, getDefaultParameterList, getLoggableParameters, getParameterList, parseArgument

Methods inherited from class qupath.lib.plugins.AbstractPlugin

addRunnableTasks, addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPlugin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface qupath.lib.plugins.PathPlugin

getDescription, getLastResultsDescription, getName, runPlugin

Constructor Details

AbstractDetectionPlugin

public AbstractDetectionPlugin()

Method Details

getSupportedParentObjectClasses

public Collection<Class<? extends PathObject>> getSupportedParentObjectClasses()

Description copied from interface: PathInteractivePlugin

Get a collection of possible parent objects that the plugin could have. This may be used, for example, to specified that analysis may be applied to any/all TMA cores or annotations. If no parent objects are required, PathRootObject.class should be returned in the list.

Returns:

getParentObjects

protected Collection<? extends PathObject> getParentObjects(ImageData<T> imageData)

Get all selected objects that are instances of a supported class.

Specified by:

getParentObjects in class AbstractPlugin<T>

Parameters:

imageData -

Returns: