Package qupath.imagej.detect.cells

Class PositiveCellDetection

java.lang.Object

qupath.lib.plugins.AbstractPlugin<BufferedImage>

qupath.lib.plugins.AbstractInteractivePlugin<BufferedImage>

qupath.lib.plugins.AbstractDetectionPlugin<BufferedImage>

qupath.lib.plugins.AbstractTileableDetectionPlugin<BufferedImage>

qupath.imagej.detect.cells.WatershedCellDetection

qupath.imagej.detect.cells.PositiveCellDetection

All Implemented Interfaces:

PathInteractivePlugin<BufferedImage>, PathPlugin<BufferedImage>

public class PositiveCellDetection
extends WatershedCellDetection

Alternative implementation of WatershedCellDetection that automatically applies 1 or 3 intensity thresholds to classify cells.

Author:

Pete Bankhead

Field Summary

Fields inherited from class qupath.imagej.detect.cells.WatershedCellDetection

parametersInitialized

Constructor Summary

Constructors

Constructor	Description
PositiveCellDetection()	Default constructor.

Method Summary

Modifier and Type	Method	Description
protected ObjectDetector<BufferedImage>	createDetector(ImageData<BufferedImage> imageData, ParameterList params)	Wrap the detector to apply any required classification.
ParameterList	getDefaultParameterList(ImageData<BufferedImage> imageData)	This should return a default ParameterList containing any information that is needed to repeat the task exactly.
String	getName()	Get the name of the plugin for display.

Methods inherited from class qupath.imagej.detect.cells.WatershedCellDetection

getDebugMode, getDescription, getLastResultsDescription, getPreferredPixelSizeMicrons, getTileOverlap, parseArgument, setDebugMode

Methods inherited from class qupath.lib.plugins.AbstractTileableDetectionPlugin

addRunnableTasks

Methods inherited from class qupath.lib.plugins.AbstractDetectionPlugin

getParentObjects, getSupportedParentObjectClasses

Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin

alwaysPromptForObjects, getLoggableParameters, getParameterList

Methods inherited from class qupath.lib.plugins.AbstractPlugin

addWorkflowStep, getTasks, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPlugin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface qupath.lib.plugins.PathPlugin

runPlugin

Constructor Details

PositiveCellDetection

public PositiveCellDetection()

Default constructor.

Method Details

getDefaultParameterList

public ParameterList getDefaultParameterList(ImageData<BufferedImage> imageData)

Description copied from class: AbstractInteractivePlugin

This should return a default ParameterList containing any information that is needed to repeat the task exactly.

Specified by:

getDefaultParameterList in interface PathInteractivePlugin<BufferedImage>

Overrides:

getDefaultParameterList in class WatershedCellDetection

Parameters:

imageData -

Returns:

getName

public String getName()

Description copied from interface: PathPlugin

Get the name of the plugin for display.

This should be descriptive and, above all, short - as it may be used for menu item names & dialog box titles.

Specified by:

getName in interface PathPlugin<BufferedImage>

Overrides:

getName in class WatershedCellDetection

Returns:

createDetector

protected ObjectDetector<BufferedImage> createDetector(ImageData<BufferedImage> imageData,
 ParameterList params)

Wrap the detector to apply any required classification.

Overrides:

createDetector in class WatershedCellDetection

Parameters:

imageData -

params -

Returns: