Package qupath.lib.plugins.objects

Class SplitAnnotationsPlugin<T>

java.lang.Object

qupath.lib.plugins.AbstractPlugin<T>

qupath.lib.plugins.AbstractInteractivePlugin<T>

qupath.lib.plugins.objects.SplitAnnotationsPlugin<T>

Type Parameters:

T -

All Implemented Interfaces:

PathInteractivePlugin<T>, PathPlugin<T>

public class SplitAnnotationsPlugin<T>
extends AbstractInteractivePlugin<T>

Plugin to create new annotations by expanding the size of existing annotations.

Author:

Pete Bankhead

Field Summary

Fields inherited from class qupath.lib.plugins.AbstractInteractivePlugin

params

Constructor Summary

Constructors

Constructor	Description
SplitAnnotationsPlugin()

Method Summary

Modifier and Type	Method	Description
protected void	addRunnableTasks(ImageData<T> imageData, PathObject parentObject, List<Runnable> tasks)	For a specified parent object, generate a task to run.
ParameterList	getDefaultParameterList(ImageData<T> imageData)	Returns an empty ParameterList.
String	getDescription()	Get a brief description of the plugin's purpose & operation.
String	getLastResultsDescription()	(Optional) short one-line description of the results, e.g.
String	getName()	Get the name of the plugin for display.
protected Collection<? extends PathObject>	getParentObjects(ImageData<T> imageData)	Get a collection of objects to process, based on the contents of the PluginRunner.
Collection<Class<? extends PathObject>>	getSupportedParentObjectClasses()	Get a collection of possible parent objects that the plugin could have.
protected Collection<Runnable>	getTasks(ImageData<T> imageData)	Get a collection of tasks to perform.

Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin

alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgument

Methods inherited from class qupath.lib.plugins.AbstractPlugin

addWorkflowStep, postprocess, preprocess, rearrangeByStride, requestHierarchyUpdate, runPlugin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface qupath.lib.plugins.PathPlugin

runPlugin

Constructor Details

SplitAnnotationsPlugin

public SplitAnnotationsPlugin()

Method Details

getSupportedParentObjectClasses

public Collection<Class<? extends PathObject>> getSupportedParentObjectClasses()

Description copied from interface: PathInteractivePlugin

Get a collection of possible parent objects that the plugin could have. This may be used, for example, to specified that analysis may be applied to any/all TMA cores or annotations. If no parent objects are required, PathRootObject.class should be returned in the list.

Returns:

getName

public String getName()

Description copied from interface: PathPlugin

Get the name of the plugin for display.

This should be descriptive and, above all, short - as it may be used for menu item names & dialog box titles.

Returns:

getDescription

public String getDescription()

Description copied from interface: PathPlugin

Get a brief description of the plugin's purpose & operation.

If no description is provided, this may return null.

Returns:

getLastResultsDescription

public String getLastResultsDescription()

Description copied from interface: PathPlugin

(Optional) short one-line description of the results, e.g. to say how many objects detected. GUIs may choose to display this on a label during interactive processing.

Returns:

getDefaultParameterList

public ParameterList getDefaultParameterList(ImageData<T> imageData)

Returns an empty ParameterList.

Specified by:

getDefaultParameterList in interface PathInteractivePlugin<T>

Specified by:

getDefaultParameterList in class AbstractInteractivePlugin<T>

Parameters:

imageData -

Returns:

getParentObjects

protected Collection<? extends PathObject> getParentObjects(ImageData<T> imageData)

Description copied from class: AbstractPlugin

Get a collection of objects to process, based on the contents of the PluginRunner. This could (for example) return the selected object, the root object, all detection objects... depending upon what the plugin does. Each object this returns will be passed to addRunnableTasks to create a task to run. In practice, this method can be overridden to return anything/nothing if getTasks is overridden instead.

Specified by:

getParentObjects in class AbstractPlugin<T>

Parameters:

imageData -

Returns:

addRunnableTasks

protected void addRunnableTasks(ImageData<T> imageData,
 PathObject parentObject,
 List<Runnable> tasks)

Description copied from class: AbstractPlugin

For a specified parent object, generate a task to run. In practice, this method can be overridden to return anything/nothing if getTasks is overridden instead.

Specified by:

addRunnableTasks in class AbstractPlugin<T>

Parameters:

imageData -

parentObject -

tasks -

getTasks

protected Collection<Runnable> getTasks(ImageData<T> imageData)

Description copied from class: AbstractPlugin

Get a collection of tasks to perform. This will be called from AbstractPlugin.runPlugin(TaskRunner, ImageData, String) after a call to AbstractPlugin.parseArgument(ImageData, String). The default implementation simply calls AbstractPlugin.getParentObjects(ImageData), then AbstractPlugin.addRunnableTasks(ImageData, PathObject, List) for every parent object that was returned.

Overrides:

getTasks in class AbstractPlugin<T>

Parameters:

imageData -

Returns: