Package qupath.lib.images.servers.bioformats

Class OMEPixelParser

java.lang.Object

qupath.lib.images.servers.bioformats.OMEPixelParser

public class OMEPixelParser
extends Object

This class can parse raw bytes into a BufferedImage. It is intended for use with non-RGB images; AWTImageTools can be used for RGB images.

Implementation Note

INT8 and UINT32 images are currently not supported.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	OMEPixelParser.Builder	Builder for instances of OMEPixelParser.

Method Summary

Modifier and Type	Method	Description
BufferedImage	parse(byte[][] pixels, int width, int height, int nChannels, ColorModel colorModel)	Creates a BufferedImage from a 2-dimensional byte array.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

parse

public BufferedImage parse(byte[][] pixels,
 int width,
 int height,
 int nChannels,
 ColorModel colorModel)

Creates a BufferedImage from a 2-dimensional byte array.

Parameters:

pixels - the byte array containing the pixel values. The first dimension of the array refers to the channel and the second dimension refers to the position of the pixel

width - the width in pixels of the image

height - the height in pixels of the image

nChannels - the number of channels of this image

colorModel - the color model to use when creating the image

Returns:

the corresponding image