Package qupath.lib.gui.tma

Class TMADataIO

java.lang.Object

qupath.lib.gui.tma.TMADataIO

public class TMADataIO
extends Object

Static methods for exporting TMA data, optionally with small images.

Author:

Pete Bankhead

See Also:

• PathIO

Field Summary

Fields

Modifier and Type	Field	Description
static final String	TMA_DEARRAYING_DATA_EXTENSION

Constructor Summary

Constructors

Constructor	Description
TMADataIO()

Method Summary

Modifier and Type	Method	Description
static TMAGrid	importDearrayedTMAData(File file)	Import a TMA grid from an exported TMA analysis file, i.e.
static void	writeTMAData(File file, ImageData<BufferedImage> imageData)	Write TMA summary data, without any image export.
static void	writeTMAData(File file, ImageData<BufferedImage> imageData, OverlayOptions overlayOptions, double downsampleFactor)	Write TMA data in a human-readable (and viewable) way, with JPEGs and TXT/CSV files.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

TMA_DEARRAYING_DATA_EXTENSION

public static final String TMA_DEARRAYING_DATA_EXTENSION

See Also:

• Constant Field Values

Constructor Details

TMADataIO

public TMADataIO()

Method Details

writeTMAData

public static void writeTMAData(File file,
 ImageData<BufferedImage> imageData)
                         throws IOException

Write TMA summary data, without any image export.

Parameters:

file -

imageData -

Throws:

IOException

writeTMAData

public static void writeTMAData(File file,
 ImageData<BufferedImage> imageData,
 OverlayOptions overlayOptions,
 double downsampleFactor)
                         throws IOException

Write TMA data in a human-readable (and viewable) way, with JPEGs and TXT/CSV files.

Parameters:

file -

imageData -

overlayOptions -

downsampleFactor - The downsample factor used for the TMA cores. If NaN, an automatic downsample value will be selected (>= 1). If <= 0, no cores are exported.

Throws:

IOException

importDearrayedTMAData

public static TMAGrid importDearrayedTMAData(File file)

Import a TMA grid from an exported TMA analysis file, i.e. with extension ".qptma"

Parameters:

file -

Returns: