Package qupath.lib.analysis.images

Class ContourTracing.ChannelThreshold

java.lang.Object

qupath.lib.analysis.images.ContourTracing.ChannelThreshold

Enclosing class:

ContourTracing

public static class ContourTracing.ChannelThreshold
extends Object

Helper class defining global thresholds to apply to a single image channel.

Author:

Pete Bankhead

Method Summary

Modifier and Type	Method	Description
static ContourTracing.ChannelThreshold	create(int channel)	Create a simple channel threshold.
static ContourTracing.ChannelThreshold	create(int channel, double minThreshold, double maxThreshold)	Create a threshold to select values between a minimum and maximum (inclusive).
static ContourTracing.ChannelThreshold	createAbove(int channel, double minThreshold)	Create a threshold to select values greater than or equal to a specified threshold.
static ContourTracing.ChannelThreshold	createBelow(int channel, double maxThreshold)	Create a threshold to select values less than or equal to a specified threshold.
static ContourTracing.ChannelThreshold	createExactly(int channel, double threshold)	Create a threshold to select values that are exactly equal to a specified threshold.
int	getChannel()	Get the channel to threshold.
double	getMaxThreshold()	Get the maximum threshold value.
double	getMinThreshold()	Get the minimum threshold value.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details

create

public static ContourTracing.ChannelThreshold create(int channel)

Create a simple channel threshold. This contains no intensity values (min/max thresholds are infinity) but it is useful for thresholding classification images. In this case, the channel refers to the classification label.

Parameters:

channel -

Returns:

create

public static ContourTracing.ChannelThreshold create(int channel,
 double minThreshold,
 double maxThreshold)

Create a threshold to select values between a minimum and maximum (inclusive).

Parameters:

channel - channel to threshold

minThreshold - minimum value (inclusive)

maxThreshold - maximum value (inclusive)

Returns:

createAbove

public static ContourTracing.ChannelThreshold createAbove(int channel,
 double minThreshold)

Create a threshold to select values greater than or equal to a specified threshold.

Parameters:

channel - the channel to threshold

minThreshold - the minimum threshold to apply

Returns:

createBelow

public static ContourTracing.ChannelThreshold createBelow(int channel,
 double maxThreshold)

Create a threshold to select values less than or equal to a specified threshold.

Parameters:

channel - the channel to threshold

maxThreshold - the maximum threshold to apply

Returns:

createExactly

public static ContourTracing.ChannelThreshold createExactly(int channel,
 double threshold)

Create a threshold to select values that are exactly equal to a specified threshold.

Parameters:

channel - the channel to threshold

threshold - the threshold value

Returns:

getMinThreshold

public double getMinThreshold()

Get the minimum threshold value. This may be Float.NEGATIVE_INFINITY if no minimum threshold is required.

Returns:

getMaxThreshold

public double getMaxThreshold()

Get the maximum threshold value. This may be Float.POSITIVE_INFINITY if no minimum threshold is required.

Returns:

getChannel

public int getChannel()

Get the channel to threshold.

Returns:

toString

public String toString()

Overrides:

toString in class Object