| qubalab/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| qubalab/images/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| qubalab/images/bioio_server.py |
BioIOServer.__init__ |
5 |
0 |
0 |
100% |
| qubalab/images/bioio_server.py |
BioIOServer.level_to_dask |
5 |
1 |
0 |
80% |
| qubalab/images/bioio_server.py |
BioIOServer.close |
1 |
0 |
0 |
100% |
| qubalab/images/bioio_server.py |
BioIOServer._build_metadata |
1 |
0 |
0 |
100% |
| qubalab/images/bioio_server.py |
BioIOServer._read_block |
4 |
0 |
0 |
100% |
| qubalab/images/bioio_server.py |
BioIOServer._get_shapes |
7 |
1 |
0 |
86% |
| qubalab/images/bioio_server.py |
BioIOServer._get_scene_shape |
2 |
0 |
0 |
100% |
| qubalab/images/bioio_server.py |
BioIOServer._get_pixel_calibration |
5 |
1 |
0 |
80% |
| qubalab/images/bioio_server.py |
BioIOServer._is_rgb |
2 |
0 |
0 |
100% |
| qubalab/images/bioio_server.py |
BioIOServer._is_lower_resolution |
5 |
5 |
0 |
0% |
| qubalab/images/bioio_server.py |
(no function) |
27 |
0 |
0 |
100% |
| qubalab/images/icc_profile_server.py |
IccProfileServer.__init__ |
10 |
1 |
0 |
90% |
| qubalab/images/icc_profile_server.py |
IccProfileServer.icc_transform |
1 |
0 |
0 |
100% |
| qubalab/images/icc_profile_server.py |
IccProfileServer._read_block |
4 |
0 |
0 |
100% |
| qubalab/images/icc_profile_server.py |
IccProfileServer._get_icc_bytes_from_path |
8 |
3 |
0 |
62% |
| qubalab/images/icc_profile_server.py |
(no function) |
16 |
0 |
0 |
100% |
| qubalab/images/image_server.py |
ImageServer.__init__ |
3 |
0 |
0 |
100% |
| qubalab/images/image_server.py |
ImageServer.metadata |
3 |
0 |
0 |
100% |
| qubalab/images/image_server.py |
ImageServer.read_region |
17 |
1 |
0 |
94% |
| qubalab/images/image_server.py |
ImageServer.level_to_dask |
27 |
2 |
0 |
93% |
| qubalab/images/image_server.py |
ImageServer.to_dask |
24 |
5 |
0 |
79% |
| qubalab/images/image_server.py |
ImageServer.close |
1 |
1 |
0 |
0% |
| qubalab/images/image_server.py |
ImageServer._build_metadata |
1 |
1 |
0 |
0% |
| qubalab/images/image_server.py |
ImageServer._read_block |
1 |
1 |
0 |
0% |
| qubalab/images/image_server.py |
ImageServer._get_level |
8 |
1 |
0 |
88% |
| qubalab/images/image_server.py |
ImageServer._resize |
15 |
2 |
0 |
87% |
| qubalab/images/image_server.py |
ImageServer._get_size |
1 |
0 |
0 |
100% |
| qubalab/images/image_server.py |
(no function) |
29 |
0 |
0 |
100% |
| qubalab/images/labeled_server.py |
LabeledImageServer.__init__ |
12 |
1 |
0 |
92% |
| qubalab/images/labeled_server.py |
LabeledImageServer.close |
1 |
0 |
0 |
100% |
| qubalab/images/labeled_server.py |
LabeledImageServer._build_metadata |
1 |
0 |
0 |
100% |
| qubalab/images/labeled_server.py |
LabeledImageServer._read_block |
17 |
0 |
0 |
100% |
| qubalab/images/labeled_server.py |
(no function) |
17 |
0 |
0 |
100% |
| qubalab/images/metadata/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| qubalab/images/metadata/image_channel.py |
(no function) |
5 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.__init__ |
8 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.shape |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.width |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.height |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.n_channels |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.n_timepoints |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.n_z_slices |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.n_resolutions |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.downsamples |
3 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.channels |
9 |
2 |
0 |
78% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata.__eq__ |
3 |
1 |
0 |
67% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata._estimate_downsample |
9 |
1 |
0 |
89% |
| qubalab/images/metadata/image_metadata.py |
ImageMetadata._possible_downsample |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_metadata.py |
(no function) |
33 |
0 |
0 |
100% |
| qubalab/images/metadata/image_shape.py |
ImageShape.from_tczyx |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_shape.py |
ImageShape.as_tuple |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/image_shape.py |
(no function) |
11 |
0 |
0 |
100% |
| qubalab/images/metadata/pixel_calibration.py |
PixelLength.is_default |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/pixel_calibration.py |
PixelLength.create_microns |
1 |
0 |
0 |
100% |
| qubalab/images/metadata/pixel_calibration.py |
PixelLength.create_unknown |
1 |
1 |
0 |
0% |
| qubalab/images/metadata/pixel_calibration.py |
PixelCalibration.is_calibrated |
4 |
0 |
0 |
100% |
| qubalab/images/metadata/pixel_calibration.py |
(no function) |
17 |
0 |
0 |
100% |
| qubalab/images/openslide_server.py |
OpenSlideServer.__init__ |
6 |
0 |
0 |
100% |
| qubalab/images/openslide_server.py |
OpenSlideServer.close |
1 |
0 |
0 |
100% |
| qubalab/images/openslide_server.py |
OpenSlideServer._build_metadata |
11 |
4 |
0 |
64% |
| qubalab/images/openslide_server.py |
OpenSlideServer._read_block |
11 |
0 |
0 |
100% |
| qubalab/images/openslide_server.py |
OpenSlideServer._get_n_channels |
5 |
0 |
0 |
100% |
| qubalab/images/openslide_server.py |
OpenSlideServer._get_pixel_calibration |
3 |
1 |
0 |
67% |
| qubalab/images/openslide_server.py |
(no function) |
24 |
3 |
0 |
88% |
| qubalab/images/qupath_server.py |
QuPathServer.__init__ |
7 |
0 |
0 |
100% |
| qubalab/images/qupath_server.py |
QuPathServer.close |
1 |
0 |
0 |
100% |
| qubalab/images/qupath_server.py |
QuPathServer._build_metadata |
2 |
0 |
0 |
100% |
| qubalab/images/qupath_server.py |
QuPathServer._read_block |
15 |
1 |
0 |
93% |
| qubalab/images/qupath_server.py |
QuPathServer._find_qupath_server_path |
6 |
1 |
0 |
83% |
| qubalab/images/qupath_server.py |
QuPathServer._find_qupath_server_pixel_calibration |
4 |
1 |
0 |
75% |
| qubalab/images/qupath_server.py |
QuPathServer._unpack_color |
4 |
0 |
0 |
100% |
| qubalab/images/qupath_server.py |
(no function) |
25 |
0 |
0 |
100% |
| qubalab/images/region_2d.py |
Region2D.geometry |
1 |
0 |
0 |
100% |
| qubalab/images/region_2d.py |
Region2D.scale_region |
1 |
0 |
0 |
100% |
| qubalab/images/region_2d.py |
Region2D.downsample_region |
13 |
2 |
0 |
85% |
| qubalab/images/region_2d.py |
(no function) |
15 |
0 |
0 |
100% |
| qubalab/images/utils.py |
bytes_to_image |
6 |
1 |
0 |
83% |
| qubalab/images/utils.py |
base64_to_image |
1 |
0 |
0 |
100% |
| qubalab/images/utils.py |
_reorder_axes |
13 |
1 |
0 |
92% |
| qubalab/images/utils.py |
(no function) |
7 |
0 |
0 |
100% |
| qubalab/images/wrapped_image_server.py |
WrappedImageServer.__init__ |
2 |
0 |
0 |
100% |
| qubalab/images/wrapped_image_server.py |
WrappedImageServer.base_server |
1 |
0 |
0 |
100% |
| qubalab/images/wrapped_image_server.py |
WrappedImageServer.close |
1 |
0 |
0 |
100% |
| qubalab/images/wrapped_image_server.py |
WrappedImageServer._build_metadata |
1 |
0 |
0 |
100% |
| qubalab/images/wrapped_image_server.py |
(no function) |
8 |
0 |
0 |
100% |
| qubalab/objects/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| qubalab/objects/classification.py |
Classification.__init__ |
2 |
0 |
0 |
100% |
| qubalab/objects/classification.py |
Classification.name |
1 |
0 |
0 |
100% |
| qubalab/objects/classification.py |
Classification.color |
1 |
0 |
0 |
100% |
| qubalab/objects/classification.py |
Classification.get_cached_classification |
7 |
0 |
0 |
100% |
| qubalab/objects/classification.py |
Classification.__str__ |
1 |
1 |
0 |
0% |
| qubalab/objects/classification.py |
Classification.__repr__ |
1 |
1 |
0 |
0% |
| qubalab/objects/classification.py |
Classification.__eq__ |
3 |
1 |
0 |
67% |
| qubalab/objects/classification.py |
Classification.__hash__ |
1 |
0 |
0 |
100% |
| qubalab/objects/classification.py |
(no function) |
15 |
0 |
0 |
100% |
| qubalab/objects/draw.py |
draw_geometry |
18 |
0 |
0 |
100% |
| qubalab/objects/draw.py |
_draw_point |
1 |
0 |
0 |
100% |
| qubalab/objects/draw.py |
_draw_line |
1 |
0 |
0 |
100% |
| qubalab/objects/draw.py |
_draw_polygon |
8 |
0 |
0 |
100% |
| qubalab/objects/draw.py |
(no function) |
7 |
0 |
0 |
100% |
| qubalab/objects/geojson.py |
geojson_features_from_string |
4 |
0 |
0 |
100% |
| qubalab/objects/geojson.py |
_geojson_from_string |
3 |
1 |
0 |
67% |
| qubalab/objects/geojson.py |
(no function) |
4 |
0 |
0 |
100% |
| qubalab/objects/geometry.py |
ImagePlane.__init__ |
1 |
0 |
0 |
100% |
| qubalab/objects/geometry.py |
ImagePlane.__getattr__ |
4 |
2 |
0 |
50% |
| qubalab/objects/geometry.py |
ImagePlane.__setattr__ |
1 |
1 |
0 |
0% |
| qubalab/objects/geometry.py |
ImagePlane.__delattr__ |
1 |
1 |
0 |
0% |
| qubalab/objects/geometry.py |
add_plane_to_geometry |
18 |
0 |
0 |
100% |
| qubalab/objects/geometry.py |
(no function) |
9 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.__init__ |
19 |
1 |
0 |
95% |
| qubalab/objects/image_feature.py |
ImageFeature.create_from_feature |
16 |
2 |
0 |
88% |
| qubalab/objects/image_feature.py |
ImageFeature.create_from_label_image |
21 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.classification |
3 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.name |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.measurements |
5 |
2 |
0 |
60% |
| qubalab/objects/image_feature.py |
ImageFeature.object_type |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.is_detection |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.is_cell |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.is_tile |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.is_annotation |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.color |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature.nucleus_geometry |
4 |
1 |
0 |
75% |
| qubalab/objects/image_feature.py |
ImageFeature.__setattr__ |
23 |
3 |
0 |
87% |
| qubalab/objects/image_feature.py |
ImageFeature._remove_NaN_values_from_measurements |
1 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature._to_id_string |
5 |
1 |
0 |
80% |
| qubalab/objects/image_feature.py |
ImageFeature._find_property |
5 |
0 |
0 |
100% |
| qubalab/objects/image_feature.py |
ImageFeature._validate_rgb_value |
6 |
2 |
0 |
67% |
| qubalab/objects/image_feature.py |
(no function) |
49 |
0 |
0 |
100% |
| qubalab/objects/object_type.py |
(no function) |
8 |
0 |
0 |
100% |
| qubalab/qupath/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| qubalab/qupath/qupath_gateway.py |
create_gateway |
12 |
12 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
set_default_gateway |
1 |
1 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
get_default_gateway |
3 |
3 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
get_current_image_data |
2 |
2 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
get_project |
2 |
2 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
create_snapshot |
8 |
8 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
get_objects |
25 |
25 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
count_objects |
1 |
1 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
add_objects |
6 |
6 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
delete_objects |
5 |
5 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
refresh_qupath |
2 |
2 |
0 |
0% |
| qubalab/qupath/qupath_gateway.py |
(no function) |
22 |
0 |
0 |
100% |
| tests/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| tests/images/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| tests/images/metadata/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_shape |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_width |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_height |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_n_channels |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_n_timepoints |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_n_z_slices |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_n_resolutions |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_downsamples |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_channels_when_provided |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_number_of_channels_when_not_provided_and_RGB |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
test_number_of_channels_when_not_provided_and_not_RGB |
4 |
0 |
0 |
100% |
| tests/images/metadata/test_image_metadata.py |
(no function) |
14 |
0 |
0 |
100% |
| tests/images/metadata/test_image_shape.py |
test_as_tuple |
9 |
0 |
0 |
100% |
| tests/images/metadata/test_image_shape.py |
test_as_tuple_with_parameters |
9 |
0 |
0 |
100% |
| tests/images/metadata/test_image_shape.py |
test_as_tuple_with_invalid_parameters |
3 |
0 |
0 |
100% |
| tests/images/metadata/test_image_shape.py |
test_from_tuple |
8 |
0 |
0 |
100% |
| tests/images/metadata/test_image_shape.py |
test_from_invalid_tuple |
2 |
0 |
0 |
100% |
| tests/images/metadata/test_image_shape.py |
(no function) |
7 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
test_default_pixel_length |
3 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
test_default_values_of_pixel_length |
3 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
test_length_and_unit_of_pixel_length_different |
3 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
test_length |
3 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
test_unit |
3 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
test_default_pixel_calibration_not_calibrated |
2 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
test_default_pixel_calibration_calibrated |
2 |
0 |
0 |
100% |
| tests/images/metadata/test_pixel_calibration.py |
(no function) |
8 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_uint8_3channels_image_name |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_uint8_3channels_image_shapes |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_uint8_3channels_image_pixel_calibration |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_uint8_3channels_image_is_rgb |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_uint8_3channels_image_dtype |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_uint8_3channels_image_downsamples |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_read_uint8_3channels_image |
8 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_read_uint8_3channels_image_with_dask |
8 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_image_name |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_image_shapes |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_image_pixel_calibration |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_image_is_not_rgb |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_image_dtype |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_image_downsamples |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_read_float_5d_image |
8 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_read_float_5d_image_with_dask |
6 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_zarr_image_name |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
test_float_5d_zarr_image_shapes |
4 |
0 |
0 |
100% |
| tests/images/test_bioio_server.py |
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test_downsampled_float32_image |
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test_image_name |
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test_downsamples |
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test_RGB_metadata |
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test_RGB_lowest_resolution_with_temp_file |
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test_RGB_tile_of_full_resolution_with_temp_file |
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test_RGB_full_resolution_with_bytes |
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test_RGB_full_resolution_with_base64 |
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test_float32_metadata |
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test_float32_full_resolution_with_temp_file |
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test_float32_lowest_resolution_with_temp_file |
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test_float32_tile_of_full_resolution_with_temp_file |
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test_float32_full_resolution_with_bytes |
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test_float32_lowest_resolution_with_bytes |
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test_float32_full_resolution_with_base64 |
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test_float32_lowest_resolution_with_base64 |
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test_float32_tile_of_full_resolution_with_base64 |
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(no function) |
39 |
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| tests/images/test_region_2d.py |
test_default_values |
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test_geometry |
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test_downsampled_region_with_same_factor |
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test_downsampled_region_with_different_factor |
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test_scaled_region_with_different_factor |
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test_downsampled_region_with_factor_of_zero |
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test_bytes_to_image |
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SampleServer.close |
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SampleServer._build_metadata |
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test_wrapped_server |
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test_metadata |
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test_geometry |
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test_json_serializable_with_geometry |
3 |
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get_name |
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