| qubalab / __init__.py |
(no function) |
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0 |
0 |
0 |
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100% |
| qubalab / images / __init__.py |
(no function) |
|
9 |
0 |
0 |
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| qubalab / images / bioio_server.py |
BioIOServer.__init__ |
|
5 |
0 |
0 |
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| qubalab / images / bioio_server.py |
BioIOServer.level_to_dask |
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5 |
1 |
0 |
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80% |
| qubalab / images / bioio_server.py |
BioIOServer.close |
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1 |
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0 |
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| qubalab / images / bioio_server.py |
BioIOServer._build_metadata |
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1 |
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0 |
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| qubalab / images / bioio_server.py |
BioIOServer._read_block |
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4 |
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| qubalab / images / bioio_server.py |
BioIOServer._get_shapes |
|
7 |
1 |
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| qubalab / images / bioio_server.py |
BioIOServer._get_scene_shape |
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2 |
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0 |
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| qubalab / images / bioio_server.py |
BioIOServer._get_pixel_calibration |
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5 |
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| qubalab / images / bioio_server.py |
BioIOServer._is_rgb |
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2 |
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| qubalab / images / bioio_server.py |
BioIOServer._is_lower_resolution |
|
5 |
5 |
0 |
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| qubalab / images / bioio_server.py |
(no function) |
|
28 |
0 |
0 |
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100% |
| qubalab / images / icc_profile_server.py |
IccProfileServer.__init__ |
|
10 |
1 |
0 |
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| qubalab / images / icc_profile_server.py |
IccProfileServer.icc_transform |
|
1 |
0 |
0 |
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| qubalab / images / icc_profile_server.py |
IccProfileServer._read_block |
|
4 |
0 |
0 |
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| qubalab / images / icc_profile_server.py |
IccProfileServer._get_icc_bytes_from_path |
|
8 |
3 |
0 |
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62% |
| qubalab / images / icc_profile_server.py |
(no function) |
|
16 |
0 |
0 |
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100% |
| qubalab / images / image_server.py |
ImageServer.__init__ |
|
3 |
0 |
0 |
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| qubalab / images / image_server.py |
ImageServer.metadata |
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3 |
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| qubalab / images / image_server.py |
ImageServer.read_region |
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17 |
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| qubalab / images / image_server.py |
ImageServer.level_to_dask |
|
27 |
2 |
0 |
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| qubalab / images / image_server.py |
ImageServer.to_dask |
|
7 |
3 |
0 |
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| qubalab / images / image_server.py |
ImageServer._to_dask_impl |
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18 |
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0 |
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| qubalab / images / image_server.py |
ImageServer.close |
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1 |
1 |
0 |
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| qubalab / images / image_server.py |
ImageServer._build_metadata |
|
1 |
1 |
0 |
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| qubalab / images / image_server.py |
ImageServer._read_block |
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1 |
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| qubalab / images / image_server.py |
ImageServer._get_level |
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| qubalab / images / image_server.py |
ImageServer._resize |
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17 |
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ImageServer._get_size |
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1 |
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0 |
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| qubalab / images / image_server.py |
(no function) |
|
30 |
0 |
0 |
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| qubalab / images / labeled_server.py |
LabeledImageServer.__init__ |
|
12 |
1 |
0 |
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| qubalab / images / labeled_server.py |
LabeledImageServer.close |
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1 |
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| qubalab / images / labeled_server.py |
LabeledImageServer._build_metadata |
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| qubalab / images / labeled_server.py |
LabeledImageServer._read_block |
|
17 |
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| qubalab / images / labeled_server.py |
(no function) |
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17 |
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| qubalab / images / metadata / __init__.py |
(no function) |
|
4 |
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| qubalab / images / metadata / image_channel.py |
(no function) |
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5 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.__init__ |
|
8 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.shape |
|
1 |
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ImageMetadata.width |
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1 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.height |
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1 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.n_channels |
|
1 |
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0 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.n_timepoints |
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1 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.n_z_slices |
|
1 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.n_resolutions |
|
1 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.downsamples |
|
3 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.channels |
|
9 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata.__eq__ |
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3 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata._estimate_downsample |
|
9 |
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| qubalab / images / metadata / image_metadata.py |
ImageMetadata._possible_downsample |
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1 |
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0 |
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| qubalab / images / metadata / image_metadata.py |
(no function) |
|
35 |
0 |
0 |
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100% |
| qubalab / images / metadata / image_shape.py |
ImageShape.from_tczyx |
|
1 |
0 |
0 |
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100% |
| qubalab / images / metadata / image_shape.py |
ImageShape.as_tuple |
|
1 |
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| qubalab / images / metadata / image_shape.py |
(no function) |
|
11 |
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0 |
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| qubalab / images / metadata / pixel_calibration.py |
PixelLength.is_default |
|
1 |
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| qubalab / images / metadata / pixel_calibration.py |
PixelLength.create_microns |
|
1 |
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0 |
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100% |
| qubalab / images / metadata / pixel_calibration.py |
PixelLength.create_unknown |
|
1 |
1 |
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| qubalab / images / metadata / pixel_calibration.py |
PixelCalibration.is_calibrated |
|
4 |
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0 |
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| qubalab / images / metadata / pixel_calibration.py |
(no function) |
|
18 |
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| qubalab / images / openslide_server.py |
OpenSlideServer.__init__ |
|
6 |
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0 |
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100% |
| qubalab / images / openslide_server.py |
OpenSlideServer.close |
|
1 |
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0 |
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| qubalab / images / openslide_server.py |
OpenSlideServer._build_metadata |
|
11 |
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| qubalab / images / openslide_server.py |
OpenSlideServer._read_block |
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11 |
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OpenSlideServer._get_n_channels |
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5 |
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| qubalab / images / openslide_server.py |
OpenSlideServer._get_pixel_calibration |
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3 |
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| qubalab / images / openslide_server.py |
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|
24 |
3 |
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| qubalab / images / qupath_server.py |
QuPathServer.__init__ |
|
7 |
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0 |
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| qubalab / images / qupath_server.py |
QuPathServer.close |
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1 |
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QuPathServer._build_metadata |
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QuPathServer._read_block |
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15 |
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QuPathServer._find_qupath_server_path |
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6 |
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QuPathServer._find_qupath_server_pixel_calibration |
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4 |
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| qubalab / images / qupath_server.py |
QuPathServer._unpack_color |
|
4 |
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| qubalab / images / qupath_server.py |
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|
25 |
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| qubalab / images / region_2d.py |
Region2D.geometry |
|
1 |
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0 |
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Region2D.scale_region |
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1 |
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| qubalab / images / region_2d.py |
Region2D.downsample_region |
|
13 |
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| qubalab / images / region_2d.py |
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15 |
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0 |
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| qubalab / images / utils.py |
bytes_to_image |
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6 |
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| qubalab / images / utils.py |
base64_to_image |
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0 |
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| qubalab / images / utils.py |
_reorder_axes |
|
13 |
1 |
0 |
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| qubalab / images / utils.py |
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8 |
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0 |
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100% |
| qubalab / images / wrapped_image_server.py |
WrappedImageServer.__init__ |
|
2 |
0 |
0 |
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100% |
| qubalab / images / wrapped_image_server.py |
WrappedImageServer.base_server |
|
1 |
0 |
0 |
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100% |
| qubalab / images / wrapped_image_server.py |
WrappedImageServer.close |
|
1 |
0 |
0 |
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100% |
| qubalab / images / wrapped_image_server.py |
WrappedImageServer._build_metadata |
|
1 |
0 |
0 |
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100% |
| qubalab / images / wrapped_image_server.py |
(no function) |
|
8 |
0 |
0 |
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100% |
| qubalab / objects / __init__.py |
(no function) |
|
6 |
0 |
0 |
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| qubalab / objects / classification.py |
Classification.__new__ |
|
15 |
1 |
0 |
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| qubalab / objects / classification.py |
Classification.__init__ |
|
8 |
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0 |
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| qubalab / objects / classification.py |
Classification.names |
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1 |
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0 |
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100% |
| qubalab / objects / classification.py |
Classification.color |
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1 |
0 |
0 |
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| qubalab / objects / classification.py |
Classification.color |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / classification.py |
Classification.__str__ |
|
1 |
1 |
0 |
|
0% |
| qubalab / objects / classification.py |
Classification.__repr__ |
|
1 |
1 |
0 |
|
0% |
| qubalab / objects / classification.py |
Classification.__eq__ |
|
3 |
1 |
0 |
|
67% |
| qubalab / objects / classification.py |
Classification.__hash__ |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / classification.py |
(no function) |
|
17 |
0 |
0 |
|
100% |
| qubalab / objects / draw.py |
draw_geometry |
|
18 |
0 |
0 |
|
100% |
| qubalab / objects / draw.py |
_draw_point |
|
1 |
0 |
0 |
|
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| qubalab / objects / draw.py |
_draw_line |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / draw.py |
_draw_polygon |
|
8 |
0 |
0 |
|
100% |
| qubalab / objects / draw.py |
(no function) |
|
7 |
0 |
0 |
|
100% |
| qubalab / objects / geojson.py |
geojson_features_from_string |
|
4 |
0 |
0 |
|
100% |
| qubalab / objects / geojson.py |
_geojson_from_string |
|
3 |
1 |
0 |
|
67% |
| qubalab / objects / geojson.py |
(no function) |
|
4 |
0 |
0 |
|
100% |
| qubalab / objects / geometry.py |
ImagePlane.__init__ |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / geometry.py |
ImagePlane.__getattr__ |
|
4 |
2 |
0 |
|
50% |
| qubalab / objects / geometry.py |
ImagePlane.__setattr__ |
|
1 |
1 |
0 |
|
0% |
| qubalab / objects / geometry.py |
ImagePlane.__delattr__ |
|
1 |
1 |
0 |
|
0% |
| qubalab / objects / geometry.py |
add_plane_to_geometry |
|
18 |
0 |
0 |
|
100% |
| qubalab / objects / geometry.py |
(no function) |
|
9 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.__init__ |
|
19 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.create_from_feature |
|
16 |
2 |
0 |
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88% |
| qubalab / objects / image_feature.py |
ImageFeature.create_from_label_image |
|
21 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.classification |
|
3 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.name |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.measurements |
|
5 |
2 |
0 |
|
60% |
| qubalab / objects / image_feature.py |
ImageFeature.object_type |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.is_detection |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.is_cell |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.is_tile |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.is_annotation |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.color |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature.nucleus_geometry |
|
4 |
1 |
0 |
|
75% |
| qubalab / objects / image_feature.py |
ImageFeature.__setattr__ |
|
23 |
3 |
0 |
|
87% |
| qubalab / objects / image_feature.py |
ImageFeature._remove_NaN_values_from_measurements |
|
1 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature._to_id_string |
|
3 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature._find_property |
|
5 |
0 |
0 |
|
100% |
| qubalab / objects / image_feature.py |
ImageFeature._validate_rgb_value |
|
6 |
2 |
0 |
|
67% |
| qubalab / objects / image_feature.py |
(no function) |
|
49 |
0 |
0 |
|
100% |
| qubalab / objects / object_type.py |
(no function) |
|
8 |
0 |
0 |
|
100% |
| qubalab / qupath / __init__.py |
(no function) |
|
1 |
0 |
0 |
|
100% |
| qubalab / qupath / qupath_gateway.py |
create_gateway |
|
12 |
12 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
set_default_gateway |
|
1 |
1 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
get_default_gateway |
|
3 |
3 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
get_current_image_data |
|
2 |
2 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
get_project |
|
2 |
2 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
create_snapshot |
|
8 |
8 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
get_objects |
|
27 |
27 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
count_objects |
|
1 |
1 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
add_objects |
|
6 |
6 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
delete_objects |
|
5 |
5 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
refresh_qupath |
|
2 |
2 |
0 |
|
0% |
| qubalab / qupath / qupath_gateway.py |
(no function) |
|
21 |
0 |
0 |
|
100% |
| tests / __init__.py |
(no function) |
|
0 |
0 |
0 |
|
100% |
| tests / images / __init__.py |
(no function) |
|
0 |
0 |
0 |
|
100% |
| tests / images / metadata / __init__.py |
(no function) |
|
0 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_shape |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_width |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_height |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_n_channels |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_n_timepoints |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_n_z_slices |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_n_resolutions |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_downsamples |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_channels_when_provided |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_number_of_channels_when_not_provided_and_RGB |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
test_number_of_channels_when_not_provided_and_not_RGB |
|
4 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_metadata.py |
(no function) |
|
14 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_shape.py |
test_as_tuple |
|
9 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_shape.py |
test_as_tuple_with_parameters |
|
9 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_shape.py |
test_as_tuple_with_invalid_parameters |
|
3 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_shape.py |
test_from_tuple |
|
8 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_shape.py |
test_from_invalid_tuple |
|
2 |
0 |
0 |
|
100% |
| tests / images / metadata / test_image_shape.py |
(no function) |
|
7 |
0 |
0 |
|
100% |
| tests / images / metadata / test_pixel_calibration.py |
test_default_pixel_length |
|
3 |
0 |
0 |
|
100% |
| tests / images / metadata / test_pixel_calibration.py |
test_default_values_of_pixel_length |
|
3 |
0 |
0 |
|
100% |
| tests / images / metadata / test_pixel_calibration.py |
test_length_and_unit_of_pixel_length_different |
|
3 |
0 |
0 |
|
100% |
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