API documentation

This page contains the list of public classes and functions of the QuBaLab package.

• qubalab.images package
  • qubalab.images.aicsimageio_server module
  • qubalab.images.icc_profile_server module
    • IccProfileServer
      • IccProfileServer.icc_transform
  • qubalab.images.image_server module
    • ImageServer
      • ImageServer.close()
      • ImageServer.level_to_dask()
      • ImageServer.metadata
      • ImageServer.read_region()
      • ImageServer.to_dask()
  • qubalab.images.labeled_server module
    • LabeledImageServer
      • LabeledImageServer.close()
  • qubalab.images.openslide_server module
    • OpenSlideServer
      • OpenSlideServer.close()
  • qubalab.images.qupath_server module
    • QuPathServer
      • QuPathServer.close()
  • qubalab.images.region_2d module
    • Region2D
      • Region2D.downsample_region()
      • Region2D.geometry
      • Region2D.height
      • Region2D.scale_region()
      • Region2D.t
      • Region2D.width
      • Region2D.x
      • Region2D.y
      • Region2D.z
  • qubalab.images.utils module
    • base64_to_image()
    • bytes_to_image()
  • qubalab.images.wrapped_image_server module
    • WrappedImageServer
      • WrappedImageServer.base_server
      • WrappedImageServer.close()
  • Subpackages
    • qubalab.images.metadata package
      • qubalab.images.metadata.image_channel module
      • qubalab.images.metadata.image_metadata module
      • qubalab.images.metadata.image_shape module
      • qubalab.images.metadata.pixel_calibration module
• qubalab.qupath package
  • qubalab.qupath.qupath_gateway module
    • add_objects()
    • count_objects()
    • create_gateway()
    • create_snapshot()
    • delete_objects()
    • get_current_image_data()
    • get_default_gateway()
    • get_objects()
    • get_project()
    • refresh_qupath()
    • set_default_gateway()
• qubalab.objects package
  • qubalab.objects.classification module
    • Classification
      • Classification.color
      • Classification.get_cached_classification()
      • Classification.name
  • qubalab.objects.draw module
    • draw_geometry()
  • qubalab.objects.geojson module
    • geojson_features_from_string()
  • qubalab.objects.geometry module
    • ImagePlane
    • add_plane_to_geometry()
  • qubalab.objects.image_feature module
    • ImageFeature
      • ImageFeature.classification
      • ImageFeature.color
      • ImageFeature.create_from_feature()
      • ImageFeature.create_from_label_image()
      • ImageFeature.is_annotation
      • ImageFeature.is_cell
      • ImageFeature.is_detection
      • ImageFeature.is_tile
      • ImageFeature.measurements
      • ImageFeature.name
      • ImageFeature.nucleus_geometry
      • ImageFeature.object_type
  • qubalab.objects.object_type module
    • ObjectType
      • ObjectType.ANNOTATION
      • ObjectType.CELL
      • ObjectType.DETECTION
      • ObjectType.ROOT
      • ObjectType.TILE
      • ObjectType.TMA_CORE
• qubalab.display package
  • qubalab.display.plot module
    • plotImage()
    • plotImageFeatures()