QuBaLab documentation

QuBaLab is a Python package for exploring quantitative bioimage analysis… especially (but not exclusively) in combination with QuPath.

Take a look at the GitHub page of the project for more details (such as more information on the project and how to install it).

This website contains notebooks that show how to use the QuBaLab package, as well as the API documentation that provides details on every features of the package.

• Notebooks
  • Opening images
  • Communicating with QuPath
  • Working with objects
• API documentation
  • qubalab.images package
    • qubalab.images.aicsimageio_server module
    • qubalab.images.icc_profile_server module
    • qubalab.images.image_server module
    • qubalab.images.labeled_server module
    • qubalab.images.openslide_server module
    • qubalab.images.qupath_server module
    • qubalab.images.region_2d module
    • qubalab.images.utils module
    • qubalab.images.wrapped_image_server module
    • Subpackages
  • qubalab.qupath package
    • qubalab.qupath.qupath_gateway module
  • qubalab.objects package
    • qubalab.objects.classification module
    • qubalab.objects.draw module
    • qubalab.objects.geojson module
    • qubalab.objects.geometry module
    • qubalab.objects.image_feature module
    • qubalab.objects.object_type module
  • qubalab.display package
    • qubalab.display.plot module