Package qupath.process.gui.commands.density

Class DensityMapUI

java.lang.Object

qupath.process.gui.commands.density.DensityMapUI

public class DensityMapUI
extends Object

UI elements associated with density maps.

Author:

Pete Bankhead

Field Summary

Fields

Modifier and Type	Field	Description
static final PathClass	ANY_CLASS	Ignore classification (accept all objects).
static final PathClass	ANY_POSITIVE_CLASS	Accept any positive classification, including 1+, 2+, 3+.

Constructor Summary

Constructors

Constructor	Description
DensityMapUI()

Method Summary

Modifier and Type	Method	Description
static Pane	createButtonPane(QuPathGUI qupath, ObjectExpression<ImageData<BufferedImage>> imageData, ObjectExpression<DensityMaps.DensityMapBuilder> builder, StringExpression densityMapName, ObjectExpression<PixelClassificationOverlay> overlay, boolean enableUnsavedButton)	Create a pane containing standardized buttons associated with processing a density map (find hotspots, threshold, export map).
static Pane	createSaveDensityMapPane(ObjectExpression<Project<BufferedImage>> project, ObjectExpression<DensityMaps.DensityMapBuilder> densityMap, StringProperty savedName)	Create a pane that can be used to save a DensityMaps.DensityMapBuilder, with standardized display and prompts.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

ANY_CLASS

public static final PathClass ANY_CLASS

Ignore classification (accept all objects). Generated with a UUID for uniqueness, and because it should not be serialized.

ANY_POSITIVE_CLASS

public static final PathClass ANY_POSITIVE_CLASS

Accept any positive classification, including 1+, 2+, 3+. Generated with a UUID for uniqueness, and because it should not be serialized.

Constructor Details

DensityMapUI

public DensityMapUI()

Method Details

createSaveDensityMapPane

public static Pane createSaveDensityMapPane(ObjectExpression<Project<BufferedImage>> project,
 ObjectExpression<DensityMaps.DensityMapBuilder> densityMap,
 StringProperty savedName)

Create a pane that can be used to save a DensityMaps.DensityMapBuilder, with standardized display and prompts.

Parameters:

project -

densityMap -

savedName -

Returns:

createButtonPane

public static Pane createButtonPane(QuPathGUI qupath,
 ObjectExpression<ImageData<BufferedImage>> imageData,
 ObjectExpression<DensityMaps.DensityMapBuilder> builder,
 StringExpression densityMapName,
 ObjectExpression<PixelClassificationOverlay> overlay,
 boolean enableUnsavedButton)

Create a pane containing standardized buttons associated with processing a density map (find hotspots, threshold, export map). Note that because density maps need to reflect the current hierarchy, but should be relatively fast to compute (at low resolution), the full density map is generated upon request.

Parameters:

qupath - QuPathGUI instance, used to identify viewers

imageData - expression returning the ImageData to use

builder - expression returning the DensityMaps.DensityMapBuilder to use

densityMapName - name of the density map, if it has been saved (otherwise null). This is used for writing workflow steps.

overlay - optional overlay; if present, this could be used by commands to update display (e.g. by temporarily setting a color model).

enableUnsavedButton - add button to enable buttons even if no name is available (indicating the map has not been saved).

Returns:

a pane that may be added to a stage